RAMPART specifications

Information


Unique identifier OMICS_07444
Name RAMPART
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Daniel Mapleson

Publication for RAMPART

RAMPART citation

library_books

Robust high throughput prokaryote de novo assembly and improvement pipeline for Illumina data

2016
Microb Genom
PMCID: 5320598
PMID: 28348874
DOI: 10.1099/mgen.0.000083

[…] sequence, so a break is introduced. This challenge has been addressed in a number of different ways. Automatically tuning parameters and configurations can produce improved assemblies, such as using RAMPART (). The iMetAMOS pipeline () uses multiple different assemblers and picks the best result, however it takes on average over one month to assemble a single bacterial genome, which makes it comp […]

RAMPART institution(s)
The Genome Analysis Centre, Norwich Research Park, Norwich, UK

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