RCD+ specifications

Unique identifier:
OMICS_11925
Interface:
Web user interface
Input data:
Atomic coordinates (uploading a PDB file v3.x or fetching by PDB-ID), chain id, and indices of the start/end residues. To choose a prediction scenario, either Native (if the loop environment is reliable) or Modeling (to also include the side-chains of the loop neighborhood in the refinement). The presence in the PDB file of the N- and C-terminal anchor residues (indices Start-1 and End+1) coordinates is mandatory.
Computer skills:
Basic
Maintained:
Yes
Name:
Random Coordinate Descent +
Restrictions to use:
None
Programming languages:
Javascript, PHP, Python
Stability:
Stable

RCD+ support

Maintainer

  • Pablo Chacon <>

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Publications

Institution(s)

Department of Biological Chemical Physics, Chinaasolano Physical Chemistry Institute, Madrid, Spain; Department of Computer Science, Old Dominion University, Norfolk, VA, USA

Funding source(s)

Spanish Ministry of Economy and Competitiveness (BFU2013-44306P and BFU2014-51823-R); National Science Foundation [1066471]

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