RAP specifications


Unique identifier OMICS_13674
Name RAP
Alternative name Rank Align PWM
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A list of DNA probe sequences with their binding intensity
Input format PBM
Output data The binding site of the transcription factors
Operating system Unix/Linux
Programming languages Java
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes




No version available


  • person_outline Ron Shamir

Publication for Rank Align PWM

RAP institution(s)
Blavatnik School of Computer Science, Tel-Aviv University, Tel-Aviv, Israel
RAP funding source(s)
This work was supported by the European Community’s Seventh Framework (grant n°HEALTHF4-2009-223575) for the TRIREME project; the Israel Science Foundation (grant n°802/08); the Edmond J. Safra Center for Bioinformatics at Tel-Aviv University.

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