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RAPD specifications


Unique identifier OMICS_05729
Alternative name Recombinantly-produced Antimicrobial Peptides Database
Restrictions to use None
Maintained No

Publication for Recombinantly-produced Antimicrobial Peptides Database

RAPD citations


Monitoring Viable Cells of the Biological Control Agent Lactobacillus plantarum PM411 in Aerial Plant Surfaces by Means of a Strain Specific Viability Quantitative PCR Method

Appl Environ Microbiol
PMCID: 5930365
PMID: 29523544
DOI: 10.1128/AEM.00107-18

[…] All primers, PCR mixtures, and PCR conditions used in this study are described in and , and amplified fragments were analyzed using standard methods.RAPD-PCR analysis was carried out to identify a PM411 strain-specific molecular marker. Seven primers were tested in strain PM411 and other selected L. plantarum strains (ATCC 8014, CECT 223, CECT 452 […]


Estimating Genetic Conformism of South Korean Mulberry Cultivars Using Random Amplified Polymorphic DNA and Inter Simple Sequence Repeat Profiling

PMCID: 5874610
PMID: 29543756
DOI: 10.3390/plants7010021

[…] The amplified DNA band fragments of the RAPD and ISSR assay were scored in binary characters, where 1 and 0 indicate the presence and absence of each band, respectively. Only bands repeatable in at least two independent experiments with the […]


Recent progress in whole genome sequencing, high density linkage maps, and genomic databases of ornamental plants

Breed Sci
PMCID: 5903975
PMID: 29681748
DOI: 10.1270/jsbbs.17080

[…] most number of linkage maps have been produced for rose (). Until now, linkage maps for Rosa species have been produced for several diploid (, , , , , ) and tetraploid populations (, , , ) using SSR, RAPD, AFLP, RFLP, and SCAR markers. NGS has made it possible to rapidly and cheaply identify large numbers of single nucleotide polymorphisms (SNPs) in genomes. SNPs are useful molecular markers becau […]


RAPD PCR Profile, Antibiotic Resistance, Prevalence of armA Gene, and Detection of KPC Enzyme in Klebsiella pneumoniae Isolates

PMCID: 5829425
PMID: 29623139
DOI: 10.1155/2018/6183162

[…] Molecular typing of K. pneumoniae isolates was performed using RAPD PCR analysis with the primer 640 (CGTGGGGCCT) (Faza Biotech, Tehran, Iran). Reaction mixtures (25 µl) contained: 12.5 µl (Exprime Taq Premix (2X) Mastermix (Global Gene Network Bio, cat. no. G-50 […]


Antibiotic Resistance Susceptibility Profiles of Streptococcus thermophilus Isolated from Raw Milk and Genome Analysis of the Genetic Basis of Acquired Resistances

Front Microbiol
PMCID: 5744436
PMID: 29312272
DOI: 10.3389/fmicb.2017.02608

[…] to be located in the bacterial chromosome.The isolates resistant to tetracycline (seven) and erythromycin (two) were then subjected to molecular typing by the rapid amplification of polymorphic DNA (RAPD) technique using three different primers in order to assess whether they corresponded to different strains or to replicates (Supplementary Figures –). Given the reproducibility of the assay (>92% […]


Genetic characterization and in vitro activity of antimicrobial combinations of multidrug resistant Acinetobacter baumannii from a general hospital in China

PMCID: 5776888
PMID: 29434938
DOI: 10.3892/ol.2017.7600

[…] ted and purified by using Tiangen UltraClean Microbial DNA Isolation kit (Tiangen Biotech Co., Ltd., Beijing, China) according to the manufacturer's instructions. MDRAB genotyping was conducted using RAPD (Applied Biosystems; Thermo Fisher Scientific, Inc., Waltham, MA, USA) with an AP2 primer (5-GTTTCGCTCC-3) designed by Primers Express software (version 2.0; Applied Biosystems; Thermo Fisher Sci […]


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RAPD institution(s)
Department of Anesthesiology, David Geffen School of Medicine, University of California, Los Angeles, CA, USA

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