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RAPIDO specifications


Unique identifier OMICS_03667
Alternative name Rapid Alignment of Protein structures In the presence of Domain mOvements
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for Rapid Alignment of Protein structures In the presence of Domain mOvements

RAPIDO citations


Development of a lab on a chip method for rapid assay of Xylella fastidiosa subsp. pauca strain CoDiRO

Sci Rep
PMCID: 5943246
PMID: 29743607
DOI: 10.1038/s41598-018-25747-4

[…] The bacteria X. fastidiosa subsp. pauca strain CoDiRO was associated to the Olive Quick Decline Syndrome (OQDS or Complesso del Disseccamento Rapido dell’Olivo, CoDiRO), a severe plant diseases that is crushing the production of olive in several districts of Salento (South Apulia, Italy). The prognosis for infected olive trees is often ill- […]


Specific Fluorescence in Situ Hybridization (FISH) Test to Highlight Colonization of Xylem Vessels by Xylella fastidiosa in Naturally Infected Olive Trees (Olea europaea L.)

Front Plant Sci
PMCID: 5897508
PMID: 29681910
DOI: 10.3389/fpls.2018.00431

[…] cies, including trees of major importance in forest ecosystems and urban greening plantations, such as oak, elm, sycamore, and maple (). Since 2013, a strain named CoDiRO (Complesso del Disseccamento Rapido dell’Olivo) caused an epidemic disease, the olive quick decline syndrome (OQDS) that resulted in devastation of 1000s of hectares of olive trees (Olea europaea L.) in Salento (Apulia, Italy), i […]


Preoperative short course radiotherapy with concurrent and consolidation chemotherapies followed by delayed surgery in locally advanced rectal cancer: preliminary results

PMCID: 5903358
PMID: 29621870
DOI: 10.3857/roj.2017.00185

[…] respectively. Some investigators assume that, like gastric cancer, neoadjuvant chemotherapy might be associated with improved survival. Currently, this hypothesis is being tested in adjunct to SRT in RAPIDO trial []. However, the above studies used chemotherapy in a sequential fashion with SRT but in trials implementing concurrent chemotherapy protocols, the rate of cPR ranged from 1.4% to 21.1% [ […]


Biomarker expression in rectal cancer tissue before and after neoadjuvant therapy

PMCID: 5870658
PMID: 29615840
DOI: 10.2147/OTT.S145473

[…] d the neoadjuvantly treated patients (). CRT consisted of a combination of chemo- and radiotherapy, eg, 25×2 Gray and Capecitabine with/without Avastin or 5×5 Gray with Capecitabine plus Oxaliplatin (RAPIDO study design). Available FFPE tissue blocks of diagnostic biopsy specimens, tumor resection material and metastatic LNs were collected. All biopsies from patients treated with neoadjuvant CRT w […]


Infection by Mycoplasma spp., feline immunodeficiency virus and feline leukemia virus in cats from an area endemic for visceral leishmaniasis

PMCID: 5859654
PMID: 29554969
DOI: 10.1186/s13071-018-2716-9

[…] l analyzed. Concurrently, one drop of the spicules collected from each sample was placed onto a glass microscope slide and a squash preparation was made. The slide was stained by Diff-Quick (Panótico Rápido®, Laborclin, São Paulo, Brazil) and evaluated cytologically by a veterinary clinical pathologist to confirm the presence and quality of bone marrow in the sample. […]


A Numb–Mdm2 fuzzy complex reveals an isoform specific involvement of Numb in breast cancer

PMCID: 5800818
PMID: 29269425
DOI: 10.1083/jcb.201709092
call_split See protocol

[…] TBi copies present in the two crystal forms in which we crystallized Numb-PTBi (P212121 and F222) and the structure of mouse PTBo (PDB ID 3F0W). The superposition was performed with the online server Rapido. […]


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RAPIDO institution(s)
IFOM, the FIRC Institute for Molecular Oncology Foundation, European Institute of Oncology, Milan, Italy

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