RAPSearch pipeline

RAPSearch specifications

Information


Unique identifier OMICS_05144
Name RAPSearch
Alternative name Reduced Alphabet based Protein similarity Search
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Yuzhen Ye <>

Publications for Reduced Alphabet based Protein similarity Search

RAPSearch citations

 (2)
2016
PMCID: 4740750

[…] 1, max_internal_gap_same_path 3). spf sequences were identified by aligning de novo to a dataset containing known palmate newt spf sequences (genbank numbers kj402326–kj402357) using rapsearch29 and the blast application in clc genomics workbench (v8.0.1)., rapid amplification of cdna ends (race) was performed to obtain complete protein sequences from different spf precursors. […]

2015
PMCID: 4345460

[…] [26]. spf sequences were identified by blasting assembled transcripts against an in-house database, and through aligning them to a dataset containing spf sequences from the uniprot database using rapsearch [27]., rapid amplification of cdna ends (race) was performed to obtain complete protein sequences from different spf precursors. primers were designed on the 3′-untranslated region […]

RAPSearch institution(s)
School of Informatics and Computing and Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN, USA
RAPSearch funding source(s)
National Institutes of Health (1R01HG004908)

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