RaptorX-Property specifications

Information


Unique identifier OMICS_11627
Name RaptorX-Property
Interface Web user interface
Restrictions to use None
Input data The only required input to the server is one (or batch of) protein sequence(s).
Input format FASTA
Output data The result page has three sections. The first section includes (a) a summary of prediction results, (b) the result download button and (c) job status. The second section shows the prediction results in strings, with the first row showing input sequence, and the remaining four rows showing the predicted SS3, SS8, ACC and DISO. The third section shows the predicted distribution at each residue, which will be displayed when hovering mouse over a residue.
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Sheng Wang

Publication for RaptorX-Property

RaptorX-Property citations

 (2)
library_books

Polymorphism in merozoite surface protein 7E of Plasmodium vivax in Thailand: Natural selection related to protein secondary structure

2018
PLoS One
PMCID: 5931635
PMID: 29718980
DOI: 10.1371/journal.pone.0196765

[…] Protein secondary structure prediction of PvMSP-7E by using DeepCNF method implemented in the RaptorX-Property Web-Server has revealed 10 α-helical domains. Four α-helices were located in the N-terminal and the remaining 6 α-helices at the C-terminal (). The majority of the non-helical regions […]

library_books

The Bacillus subtilis Conjugative Plasmid pLS20 Encodes Two Ribbon Helix Helix Type Auxiliary Relaxosome Proteins That Are Essential for Conjugation

2017
Front Microbiol
PMCID: 5675868
PMID: 29163424
DOI: 10.3389/fmicb.2017.02138

[…] Corresponding sequences were submitted to the RaptorX property web server () and predictions for β-strands and α-helices along the sequences were plotted with “R”) (). […]

RaptorX-Property institution(s)
Toyota Technological Institute at Chicago, Chicago, IL, USA; Department of Human Genetics, University of Chicago, Chicago, IL, USA; School of Biological and Chemical Engineering, Zhejiang University of Science and Technology, Zhejiang, China
RaptorX-Property funding source(s)
National Institutes of Health [R01GM0897532]; National Science Foundation [DBI-0960390]

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