RaceID specifications

Information


Unique identifier OMICS_12591
Name Rare cell type IDentification
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Input data have to be provided as a data.frame object with expression values, i. e. raw read or transcript counts, with genes as rows and cells as columns. Row names should correspond to gene identifiers and column names to identifiers of single cell samples. It is recommended to remove any spike-in RNAs from the expression table, if clustering due to variability of non-endogenous transcripts should be avoided.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Dominic GrĂ¼n <>

RaceID article

RaceID institution(s)
Hubrecht Institute-KNAW (Royal Netherlands Academy of Arts and Sciences), Utrecht, Netherlands; University Medical Center Utrecht, Cancer Genomics Netherlands, Utrecht, Netherlands
RaceID funding source(s)
This work was supported by an European Research Council Advanced grant (ERC-AdG 294325-GeneNoiseControl) and a Nederlandse Organisatie voor Wetenschappelijk Onderzoek (NWO) Vici award.

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