RareVar specifications

Information


Unique identifier OMICS_18584
Name RareVar
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Maintainers


  • person_outline Yangyang Hao <>
  • person_outline Yunlong Liu <>

Additional information


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Publication for RareVar

RareVar in publication

PMCID: 5001245
PMID: 27556804
DOI: 10.1186/s12864-016-2905-x

[…] a brief summary of the tools mentioned above is included in additional file ., by analyzing previous efforts, our group proposed a framework (yangyang hao xx, li l, nakshatri h, edenberg hj, liu y. rarevar: a framework for detecting low frequency single nucleotide variants, submitted) to first generated position specific error model (psem) using genome sequence contexts for candidate snv […]


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RareVar institution(s)
Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN, USA; Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA; Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN, USA; Center for Medical Genomics, Indiana University School of Medicine, Indianapolis, IN, USA; Department of Surgery, Indiana University School of Medicine, Indianapolis, IN, USA; IU Simon Cancer Center, Indiana University School of Medicine, Indianapolis, IN, USA
RareVar funding source(s)
Supported by funds from the US National Institutes of Health U10AA008401 (Collaborative Study on the Genetics of Alcoholism), Pilot funds from the breast cancer program of IUSCC (Indiana University Simon Cancer Center), and Zeta Tau Sorority and Susan G. Komen for the Cure grant SAC110025.

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