RASP pipeline

RASP specifications

Information


Unique identifier OMICS_13158
Name RASP
Alternative name Reconstruct Ancestral State in Phylogenies
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data Trees datasets
Input format TRE, T, TREES
Output data Biogeographic reconstructions, probabilities of ancestral states at nodes
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
Computer skills Advanced
Version 3.2
Stability Stable
Requirements Net framework or Wineskin or Mono runtime/Mono-vbnc
Source code URL http://mnh.scu.edu.cn/soft/blog/RASP/RASP.zip
Maintained Yes

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Maintainer


  • person_outline Xingjin He <>

Publication for Reconstruct Ancestral State in Phylogenies

RASP IN pipelines

 (2)
2017
PMCID: 5630607
PMID: 28986552
DOI: 10.1038/s41598-017-12839-w

[…]  3a). the geographical distribution of pyrrosia s.l. mostly followed hovenkamp4 and referred to other literatures3,8,32. we carried out biogeography analyses using the dec model112,113 implemented in rasp 3.2114. we inferred possible biogeographical scenarios across 1000 trees obtained from the beast analysis in the dec analysis. a composite akaike weight was used to summarize biogeographic recons […]

2017
PMCID: 5773327
PMID: 29375785
DOI: 10.1002/ece3.3719

[…] 2012). figtree 1.4.0 (rambaut, 2009) was used to display mean ages and highest posterior density intervals at 95% for each node., we used the bayesian binary mcmc (bbm) method implemented in rasp 3.0.0 to estimate the possible ancestral areas of triplostegia with the trees obtained from the intraspecific beast analysis (yu, harris, blair, & he, 2015). three geographical regions […]

RASP institution(s)
Key Laboratory of Bio-Resources and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, China; Department of Biology, Duke University, Durham, NC, USA; Department of Botany, Oklahoma State University, Stillwater, OK, USA; Department of Biological Sciences, New York City College of Technology, New York, NY, USA
RASP funding source(s)
National Natural Science Foundation of China (Grant Nos. 31270241, 31100161); the Specimen Platform of China, Teaching Specimen’s sub-platform

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