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RasTop specifications

Information


Unique identifier OMICS_05055
Name RasTop
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Windows
License GNU General Public License version 2.0
Computer skills Medium
Version 2.2
Stability Stable
Maintained Yes

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  • person_outline Herbert J. Bernstein <>

RasTop in publications

 (9)
PMCID: 5734183
PMID: 29126765
DOI: 10.1016/j.ymgme.2017.10.004

[…] ., the locations of the three mutations were mapped on the crystal structure of human mitochondrial phenylalanyl-trna synthetase (fars2) complexed with trnaphe (pdb id: 3tup) using the program rastop 2.2 (available at http://www.geneinfinity.org/rastop/, accessed on 7–11-17). protein structure is shown as grey ribbon, mutation sites as red spheres, and functionally important residues […]

PMCID: 4767401
PMID: 26179960
DOI: 10.1002/ana.24485

[…] crystal structure of holo glycine decarboxylase from synechocystis (protein data bank id: 4lhc)., the relative locations of mutated residues in the 3‐dimensional model were viewed using the program rastop 2.2 (http://www.geneinfinity.org/rastop/)., a mutation score was constructed as the sum of both alleles with a mutation without residual activity scored −1 and with residual activity +2. […]

PMCID: 4213187
PMID: 25374450
DOI: 10.4137/EBO.S17807

[…] (darkest red)., the variable and conservative human sdr regions that were recovered from both consurf and talana were plotted on the five template sdr structures (see below) and visualized using rastop2.2 (http://www.geneinfinity.org/rastop). the results of these two approaches were compared mutually for verification of their compatibility., the active site residues are not directly exposed […]

PMCID: 3546856
PMID: 23185975
DOI: 10.1186/1743-422X-9-294

[…] structures of h5 and n1 glycoprotein monomers were generated as pdb using 3d-jigsaw from index/2006 virus []. location of amino acid substitutions was imposed on the ha and na proteins using rastop software version 2.7.1 [] and further edited by inkscape., at twenty weeks of age, some birds showed cyanosis of comb and wattles, hemorrhages on the shank and a total mortality estimated […]

PMCID: 3202865
PMID: 22069753
DOI: 10.3390/toxins3080991

[…] surface area, free energy of dissociation, presence/absence of salt bridges and disulfide bonds, homomeric type, and ligands. structures, interfaces and assemblies were visualised for analysis using rastop and jmol (an open-source java viewer for chemical structures in 3d. http://www.jmol.org/)., the potential modes of motion of the different models of the rhodocytin-clec-2 complex were examined […]


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