Ray Meta protocols

Ray Meta specifications

Information


Unique identifier OMICS_01431
Name Ray Meta
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for Ray Meta

Ray Meta IN pipelines

 (2)
2017
PMCID: 5270694
PMID: 28126935
DOI: 10.1128/genomeA.01485-16

[…] adapter sequences were trimmed from the sequencing reads using cutadapt version 1.2.1 (14), quality filtering was conducted with prinseq-lite (15), and reads were assembled into contigs using ray meta with a k-mer length of 25 (16). resultant contigs were aligned to the national center for biotechnology information (ncbi) sequence database using blast. reads were aligned back […]

2015
PMCID: 4693166
PMID: 26610576
DOI: 10.3390/pathogens4040816

[…] miseq using a 300 cycle kit (illumina ms-102-2002). cutadapt [13] and prinseq-lite [14] were used to trim primers and remove poor quality reads, respectively. reads were assembled into contigs using ray meta [15] and annotation was done by blast in combination with custom scripts., a number of available safv sequences were downloaded from genbank to serve as references (table 1). to cover […]

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