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Ray

Assembles reads obtained with new sequencing technologies (Illumina, 454, SOLiD) using MPI 2.2. Ray allows to reduce the number of contigs and the number of errors. It can serve as a basis to develop an assembler that can be of universal utilization. The tool can calculate assemblies in parallel using message passing interface. Ray performs very well on mixed datasets and helps to assemble genomes using high-throughput sequencing.

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1 user review

1 user review

Fabien Pichon's avatar image Fabien Pichon's country flag

Fabien Pichon

A light and efficient assembler that perform well for small genomes (not tried on eucaryote ones), with good computer memory gestion (the only one that didn't crash because of a segmentation fault!).

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Ray classification

Ray specifications

Software type:
Package/Module
Restrictions to use:
None
Parallelization:
MPI
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes

Ray distribution

versioning

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No versioning.

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Ray support

Documentation

Maintainer

  • Sebastien Boisvert <>

Credits

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Publications

Institution(s)

Département de Médecine Moléculaire, Université Laval, Québec, Canada; Infectiologie et Immunologie, Centre de Recherche du CHUQ, Québec, Canada; Département d’Informatique et de Génie Logiciel, Université Laval, Québec, Canada

Funding source(s)

Supported by the Canadian Institutes of Health Research and the Natural Sciences and Engineering Research Council of Canada (NSERC discovery grant 262067).

Link to literature

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