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RNA-binding protein-target interaction databases | RNA modification data analysis

Regulation of gene expression is executed in many cases by RNA-binding proteins (RBPs) that bind to mRNAs as well as to non-coding RNAs. RBPs recognize their RNA target via specific binding sites on the RNA.Source text:(Paz et al., 2014) RBPmap: a…
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RBP-Var
Dataset

RBP-Var

Provides annotation of functional variants involved in post-transcriptional…

Provides annotation of functional variants involved in post-transcriptional interaction and regulation. RBP-Var provides a user-friendly web interface, allowing users to rapidly find whether SNVs of…

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CISBP-RNA
Dataset

CISBP-RNA Catalog of Inferred Sequence Binding Preferences of RNA binding proteins

An online library of RNA binding proteins and their motifs. These data provide…

An online library of RNA binding proteins and their motifs. These data provide an unprecedented overview of RNA-binding proteins and their targets, and constitute an invaluable resource for…

rVarBase
Dataset

rVarBase

An updated version of the rSNPBase database, to provide reliable and detailed…

An updated version of the rSNPBase database, to provide reliable and detailed regulatory annotations for known and novel human variants. This update expands the database to include additional types…

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POSTAR
Dataset

POSTAR POST-trAnscriptional Regulation

Explores RNA-Binding Proteins (RBP)-target interactions and their putative…

Explores RNA-Binding Proteins (RBP)-target interactions and their putative functions and consequences. POSTAR facilitates searching, annotation, visualization, integration, connection, and…

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CLIPZ
Web

CLIPZ

Allows to analyse binding sites of RNA-binding proteins. CLIPZ is a database…

Allows to analyse binding sites of RNA-binding proteins. CLIPZ is a database and an analysis environment which supports the automatic functional annotation of short reads resulting primarily from…

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RAID
Dataset

RAID RNA Association Interaction Database

Provides RNA-associated (RNA-RNA/RNA-protein) interaction database. RAID…

Provides RNA-associated (RNA-RNA/RNA-protein) interaction database. RAID intends to provide the scientific community with all-in-one resources for efficient browsing and extraction of the…

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MotifMap-RNA
Web

MotifMap-RNA

Predicts z-score based binding sites specific to RNA binding proteins (RBPs)…

Predicts z-score based binding sites specific to RNA binding proteins (RBPs) motifs across the human and mouse genomes. MotifMap-RNA is an extension of MotifMap, a system for transcription factors…

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starBase
Dataset

starBase

It is designed for decoding Pan-Cancer and Interaction Networks of lncRNAs,…

It is designed for decoding Pan-Cancer and Interaction Networks of lncRNAs, miRNAs, competing endogenous RNAs(ceRNAs), RNA-binding proteins (RBPs) and mRNAs from large-scale CLIP-Seq (HITS-CLIP,…

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ATtRACT
Dataset

ATtRACT A daTabase of RNA binding proteins and AssoCiated moTifs

Collects in a unique resource all available information about RNA-binding…

Collects in a unique resource all available information about RNA-binding proteins (RBPs) and their associated motifs. In comparison to other similar databases, ATtRACT adds 192 motifs not present in…

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UTRdb/UTRSite
Dataset

UTRdb/UTRSite

A curated database of 5' and 3' untranslated sequences of eukaryotic…

A curated database of 5' and 3' untranslated sequences of eukaryotic mRNAs, derived from several sources of primary data. Experimentally validated functional motifs are annotated and also…

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CLIPdb
Dataset

CLIPdb

Aims to characterize the regulatory networks between RNA binding proteins…

Aims to characterize the regulatory networks between RNA binding proteins (RBPs) and various RNA transcript classes by integrating large amounts of CLIP-seq (including HITS-CLIP, PAR-CLIP and iCLIP…

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RBPDB
Dataset

RBPDB RNA-Binding Protein DataBase

A collection of experimental observations of RNA-binding sites, both in vitro…

A collection of experimental observations of RNA-binding sites, both in vitro and in vivo, manually curated from primary literature. The database is accessible by a web interface which allows…

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AURA
Dataset

AURA Atlas of UTR Regulatory Activity

A manually curated and comprehensive catalog of human mRNA untranslated regions…

A manually curated and comprehensive catalog of human mRNA untranslated regions (UTRs) and UTR regulatory annotations. Through its intuitive web interface, it provides full access to a wealth of…

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SpliceAid-F
Dataset

SpliceAid-F

Collects into a unique resource several heterogeneous information about…

Collects into a unique resource several heterogeneous information about splicing regulatory proteins, their binding sites and context-specific activity. Information of binding sites includes the…

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PTRguide
Dataset

PTRguide

A website listing databases and tools for post-transcriptional regulation of…

A website listing databases and tools for post-transcriptional regulation of gene expression (PTR) analysis. PTRguide provides summary and features for each one and will be regularly updated in the…

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