Protocols

RBRDetector specifications

Information


Unique identifier OMICS_09354
Name RBRDetector
Alternative name RNA-Binding Residue Detector
Interface Web user interface
Restrictions to use None
Input data PDB files (or PDB IDs)
Computer skills Basic
Stability No
Maintained No

Publication for RNA-Binding Residue Detector

RBRDetector citations

 (2)
library_books

RBscoreandNBench: a high level web server for nucleic acid binding residues prediction with a large scale benchmarking database

2016
Nucleic Acids Res
PMCID: 4987871
PMID: 27084939
DOI: 10.1093/nar/gkw251

[…] to the high RBscore region. Additionally, users can load other molecules or save the figure or molecule coordinates.Figure compares three existing demonstrations of prediction score mapping schemes. RBRDetector uses a binary color scheme on a cartoon model of the protein while highlighting the predicted binding sites with stick model. Such plots can clearly show the binding sites when the predict […]

call_split

A Large Scale Assessment of Nucleic Acids Binding Site Prediction Programs

2015
PLoS Comput Biol
PMCID: 4683125
PMID: 26681179
DOI: 10.1371/journal.pcbi.1004639
call_split See protocol

[…] e identity in RNABindRPlus. KYG was predicted with command line using “method_type = 8” option. RBscore_SVM was based on the training set of R246. DBS-PSSM, DBS-Pred, RBRIdent, PPRInt, PRBR, DNABind, RBRDetector and ProteDNA were used with default parameter. The DISPLAR program was provided by Sanbo Qin and was run with default parameters. BindN and BindN+ were used by default parameters, while su […]

RBRDetector institution(s)
Agricultural Bioinformatics Key Laboratory of Hubei Province, College of Informatics, Huazhong Agricultural University, Wuhan, Hubei, China

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