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|Alternative name||RNA Binding score|
|Interface||Web user interface|
|Restrictions to use||Academic or non-commercial use|
Publication for RNA Binding score
RBscoreandNBench: a high level web server for nucleic acid binding residues prediction with a large scale benchmarking database
[…] Several normalization steps were processed before calculating RBscore: (i) alternative locations are cleaned leaving only the first state; (ii) residues with incomplete backbone atoms (N, CA and C) are dropped; (iii) Selenomethionines are taken as methionine, wh […]
A Large Scale Assessment of Nucleic Acids Binding Site Prediction Programs
[…] parameters. RNABindR and RNABindRPlus were predicted with default parameters, while removing 95% sequence identity in RNABindRPlus. KYG was predicted with command line using “method_type = 8” option. RBscore_SVM was based on the training set of R246. DBS-PSSM, DBS-Pred, RBRIdent, PPRInt, PRBR, DNABind, RBRDetector and ProteDNA were used with default parameter. The DISPLAR program was provided by S […]
Phylogenomics and sequence structure function relationships in the GmrSD family of Type IV restriction enzymes
[…] server . The best scoring models reported by the server were chosen. For GmrS domain restraints on the protein interface were applied, based on the prediction of DNA binding residues done using the RBscore server  and based on the analysis of sequence conservation. The docked DNA structure is the idealized B-DNA model provided in the NPdock server example data.The distribution of electrostatic […]
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