RCAS statistics

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Citations per year

Number of citations per year for the bioinformatics software tool RCAS
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Tool usage distribution map

This map represents all the scientific publications referring to RCAS per scientific context
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Associated diseases

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Popular tool citations

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RCAS specifications

Information


Unique identifier OMICS_16520
Name RCAS
Alternative name RNA Centric Annotation System
Interface Web user interface
Restrictions to use None
Output format HTML
Programming languages R
License Artistic License version 2.0
Computer skills Basic
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Altuna Akalin

Information


Unique identifier OMICS_16520
Name RCAS
Alternative name RNA Centric Annotation System
Software type Package/Module
Interface Command line interface
Restrictions to use None
Output format HTML
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.7.3
Stability Stable
Requirements
AnnotationDbi, methods, stats, BiocGenerics, GenomicRanges, utils, testthat, S4Vectors, Biostrings, rtracklayer, ggplot2, BSgenome.Hsapiens.UCSC.hg19, biomaRt, GenomicFeatures, data.table, plotrix, BSgenome.Mmusculus.UCSC.mm9, org.Hs.eg.db, RSQLite, DBI, BSgenome.Mmusculus.UCSC.mm10, org.Mm.eg.db, org.Ce.eg.db, BSgenome.Celegans.UCSC.ce10, pheatmap, pbapply, topGO, R(>=3.3.0), covr, cowplot, proxy, org.Dm.eg.db, DT(>=0.2), plotly(>=4.5.2), motifRG, GenomeInfoDb(>=1.12.0), rmarkdown(>=0.9.5), genomation(>=1.5.5), knitr(>=1.12.3), ggseqlogo, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Dmelanogaster.UCSC.dm3
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Altuna Akalin

Publication for RNA Centric Annotation System

RCAS citation

library_books

RARβ regulates neuronal cell death and differentiation in the avian ciliary ganglion

2015
Dev Neurobiol
PMCID: 4832352
PMID: 25663354
DOI: 10.1002/dneu.22278

[…] The RCAS(BP)B‐plasmid carrying the micro‐RNA operon expression cassettes with the shRNA‐hairpin insert against RARB (RCASBshRARB) was constructed according to (Das et al., ) and transfected into DF‐1 cell […]


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RCAS funding source(s)
Supported by German Federal Ministry of Education and Research (BMBF) as part of the RNA Bioinformatics Center of the German Network for Bioinformatics Infrastructure [031 A538C RBC (de.NBI)].

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