RCD+ specifications

Information


Unique identifier OMICS_11925
Name RCD+
Alternative name Random Coordinate Descent +
Interface Web user interface
Restrictions to use None
Input data Atomic coordinates (uploading a PDB file v3.x or fetching by PDB-ID), chain id, and indices of the start/end residues. To choose a prediction scenario, either Native (if the loop environment is reliable) or Modeling (to also include the side-chains of the loop neighborhood in the refinement). The presence in the PDB file of the N- and C-terminal anchor residues (indices Start-1 and End+1) coordinates is mandatory.
Programming languages Javascript, PHP, Python
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Pablo Chacon <>

Publications for Random Coordinate Descent +

RCD+ institution(s)
Department of Biological Chemical Physics, Chinaasolano Physical Chemistry Institute, Madrid, Spain; Department of Computer Science, Old Dominion University, Norfolk, VA, USA
RCD+ funding source(s)
Spanish Ministry of Economy and Competitiveness (BFU2013-44306P and BFU2014-51823-R); National Science Foundation [1066471]

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