RCDI/eRCDI specifications

Information


Unique identifier OMICS_22349
Name RCDI/eRCDI
Alternative name Relative Codon Deoptimization Index / Expected RDCI
Interface Web user interface
Restrictions to use None
Input data Some sequences, a codon usage table and the genetic code.
Input format FASTA
Output data Genes’ parameters: the RCDI values, the frequencies for all codons [(CiFa/CiFh) Ni;] and the %G+C of each gene; Global parameters: the mean %G+C and amino acid composition, and the number of sequences used to calculate the eRCDI; Statistical tests; and Expected RCDI: the mean RCDI value from random sequences and the eRCDI value.
Programming languages PHP
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Pere Puigbò <>

Information


Unique identifier OMICS_22349
Name RCDI/eRCDI
Alternative name Relative Codon Deoptimization Index / Expected RDCI
Software type Application/Script
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl
Computer skills Advanced
Version 1.4
Stability Stable
Requirements tcl/tk
Maintained Yes

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Maintainer


  • person_outline Pere Puigbò <>

Publication for Relative Codon Deoptimization Index / Expected RDCI

RCDI/eRCDI institution(s)
National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA; Department of Microbiology, University of Barcelona, Barcelona, Spain; Department of Biochemistry and Biotechnology, Nutrigenomics Research Group, Rovira i Virgili University, Tarragona, Spain
RCDI/eRCDI funding source(s)
Supported by the Department of Health and Human Services intramural program (National Institutes of Health, National Library of Medicine).

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