RchyOptimyx statistics

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Citations per year

Number of citations per year for the bioinformatics software tool RchyOptimyx

Tool usage distribution map

This map represents all the scientific publications referring to RchyOptimyx per scientific context
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Associated diseases


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RchyOptimyx specifications


Unique identifier OMICS_05637
Name RchyOptimyx
Alternative name cellular hieraRCHY OPTIMization
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 2.20.0
Stability Stable
methods, graphics, grDevices, R(>=2.10), graph, Rgraphviz, sfsmisc, flowCore, flowType(>=2.0.0)
Maintained Yes


No version available


Publications for cellular hieraRCHY OPTIMization

RchyOptimyx citations


Flow Cytometry Bioinformatics

PLoS Comput Biol
PMCID: 3867282
PMID: 24363631
DOI: 10.1371/journal.pcbi.1003365
call_split See protocol

[…] his functionality was first implemented in FlowJo . The flowType algorithm builds on this framework by allowing the exclusion of the markers . This enables the development of statistical tools (e.g., RchyOptimyx) that can investigate the importance of each marker and exclude high-dimensional redundancies . […]


Integration of Lyoplate Based Flow Cytometry and Computational Analysis for Standardized Immunological Biomarker Discovery

PLoS One
PMCID: 3701052
PMID: 23843942
DOI: 10.1371/journal.pone.0065485
call_split See protocol

[…] used to identify cell populations, and the immunophenotypes with high area under the curve (AUC) score after a receiver operating characteristic (ROC) curve analysis were selected for analysis using RchyOptimyx , . […]

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RchyOptimyx institution(s)
Bioinformatics Graduate Program, University of British Columbia, Vancouver, BC, Canada

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