RchyOptimyx specifications


Unique identifier OMICS_05637
Name RchyOptimyx
Alternative name cellular hieraRCHY OPTIMization
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 2.20.0
Stability Stable
methods, graphics, grDevices, R(>=2.10), graph, Rgraphviz, sfsmisc, flowCore, flowType(>=2.0.0)
Maintained Yes


No version available


Publications for cellular hieraRCHY OPTIMization

RchyOptimyx citations


Flow Cytometry Bioinformatics

PLoS Comput Biol
PMCID: 3867282
PMID: 24363631
DOI: 10.1371/journal.pcbi.1003365
call_split See protocol

[…] his functionality was first implemented in FlowJo . The flowType algorithm builds on this framework by allowing the exclusion of the markers . This enables the development of statistical tools (e.g., RchyOptimyx) that can investigate the importance of each marker and exclude high-dimensional redundancies . […]


Integration of Lyoplate Based Flow Cytometry and Computational Analysis for Standardized Immunological Biomarker Discovery

PLoS One
PMCID: 3701052
PMID: 23843942
DOI: 10.1371/journal.pone.0065485
call_split See protocol

[…] used to identify cell populations, and the immunophenotypes with high area under the curve (AUC) score after a receiver operating characteristic (ROC) curve analysis were selected for analysis using RchyOptimyx , . […]

RchyOptimyx institution(s)
Bioinformatics Graduate Program, University of British Columbia, Vancouver, BC, Canada

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