RDDpred specifications

Information


Unique identifier OMICS_10995
Name RDDpred
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data RDDpred takes alignment results as input data and gives the prediction results of each SNVs, or RDD candidates as outputs. The raw RDD candidates are detected with Samtools-Bcftools pipeline while the prediction model is trained by using WEKA package.
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements SAMtools-Bcftools, WEKA
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Sun Kim <>

Publication for RDDpred

RDDpred institution(s)
Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Korea; Department of Computer Science and Engineering, Seoul National University, Seoul, Korea; Bioinformatics Institute, Seoul National University, Seoul, Korea
RDDpred funding source(s)
This research was supported by the Bio & Medical Technology Development Program of the NRF funded by the Korean government, MSIP (No. NRF-2014M3C9A3063541). Also, this research was supported by Next-Generation Information Computing Development Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Science, ICT & Future Planning (No. NRF-2012M3C4A7033341).

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