rDiff specifications

Unique identifier:
OMICS_01338
Interface:
Command line interface
Input format:
BAM+GFF3
Biological technology:
Illumina, Pacific Biosciences
License:
GNU General Public License version 3.0
Stability:
Stable
Maintained:
Yes
Software type:
Application/Script
Restrictions to use:
None
Output format:
TAB+MAT
Operating system:
Unix/Linux, Mac OS
Computer skills:
Advanced
Requirements:
Octave or Matlab, Scipy, Samtools, wget

versioning

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rDiff distribution

download

rDiff support

Maintainers

  • Gunnar Rätsch <>
  • Gunnar Rätsch <>
  • Philipp Drewe <>

forum

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Credits

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Publications

Institution(s)

Computational Biology Center, Sloan-Kettering Institute, New York, NY, USA; Friedrich Miescher Laboratory of the Max-Planck Society, Tubingen, Germany; Machine Learning and Computational Biology Research Group, Max Planck Institute for Intelligent Systems, Tubingen, Germany; Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tubingen, Germany; Center for Plant Mol. Biology, University of Tubingen, Tubingen, Germany; Center for Bioinformatics, University of Tubingen, Tubingen, Germany

Funding source(s)

Supported by Volkswagen foundation and Marie Curie FP7 fellowship; German Research Foundation [WA2167/4-1; RA1894/1-1 and RA1894/2-1]; Emmy Noether fellowship [WA2167/2-1]. MSKCC Center for Translational Cancer Genomic Analysis [U24 CA143840]; and Sloan-Kettering Institute core funding.

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