RDP FrameBot specifications

Information


Unique identifier OMICS_01527
Name RDP FrameBot
Alternative names Framebot, FBdenovo
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.2.0
Stability Stable
Source code URL https://codeload.github.com/rdpstaff/Framebot/tar.gz/1.2.0
Maintained Yes

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Documentation


Maintainer


  • person_outline James M. Tiedje <>

Additional information


https://github.com/strejcem/FBdenovo

Information


Unique identifier OMICS_01527
Name RDP FrameBot
Alternative names Framebot, FBdenovo
Interface Web user interface
Restrictions to use None
Input data Nucleotide sequence file or protein target sequence file.
Input format FASTA
Output data Dereplicated nucleotide file with sample mapping and ids, frameshift corrected protein and nucleotide sequences and frameBot statistics including closest match to reference for each query sequence.
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline James M. Tiedje <>

Additional information


https://github.com/strejcem/FBdenovo

Publications for RDP FrameBot

RDP FrameBot institution(s)
Center for Microbial Ecology, Michigan State University, East Lansing, MI, USA; School of Civil and Environmental Engineering, Yonsei University, Seoul, Korea; Computer Science and Engineering Department, Michigan State University, East Lansing, MI, USA
RDP FrameBot funding source(s)
Supported by the Office of Science (BER), U.S. Department of Energy, grant DE-FG02-99ER62848, DE-FG02-07ER64398, and DE-FC02-07ER64494 (DOE Great Lakes Bioenergy Research Center), NIH Human Microbiome Project Demonstration Project (UH3DK083993), and NEON Inc.

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