RDP Tree Builder specifications

Information


Unique identifier OMICS_18114
Name RDP Tree Builder
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline RDP Team

Additional information


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RDP Tree Builder citation

library_books

Complete genome sequence of community associated methicillin resistant Staphylococcus aureus (strain USA400 0051), a prototype of the USA400 clone

2017
PMCID: 5661904
PMID: 29091141
DOI: 10.1590/0074-02760170128

[…] SA400-0051 is only resistant to β-lactam drugs and contains the genes blaZ and mecA; this was confirmed by an antimicrobial disc susceptibility test. A tree was built based on the 16S rRNA genes with RDP Tree Builder (www.rdp.cme.msu.edu/treebuilder/treeing.spr; last access in June 2016), using Weighbor with an alphabet size of four and length of 1000. The bootstrapping process was repeated 100 ti […]

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