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Read simulation software tools | CLIP-seq data analysis

Simulated data can provide a useful approximation to real dataset in cases where experimental determination of the ground truth on a large scale is infeasible. However, for the simulation to be useful, it is critical that it has the same…
G T A T C G C T A
PARA-suite
Desktop

PARA-suite PAR-CLIP analyzer suite

A toolkit for processing and aligning short and error-prone sequencing reads.…

A toolkit for processing and aligning short and error-prone sequencing reads. PARA-suite is implemented in Java using HTSjdk, a Java API for high-throughput sequencing data formats. The PARA-suite…

G T A T C G C T A
Cseq-Simulator
Desktop

Cseq-Simulator CLIP-sequencing Simulator

Allows generation of datasets with known ground truth that exhibits several…

Allows generation of datasets with known ground truth that exhibits several characteristics of real data. Cseq-Simulator contains two options: (1) users can predict the binding sites using a position…

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