READemption pipeline

READemption specifications


Unique identifier OMICS_05473
Name READemption
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Biological technology Illumina, Roche
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes


Add your version


  • person_outline Konrad Forstner <>
  • person_outline Cynthia Sharma <>

Publication for READemption

READemption citation

PMCID: 4667094

[…] the program fastq_quality_trimmer from fastx toolkit version 0.0.131. the alignment of reads, coverage calculation, gene wise read quantification and differential gene expression was performed with reademption (förstner et al., 2014) version 0.3.5 (doi: 10.5281/zenodo.13926), ‘segemehl’ (hoffmann et al., 2009) version 0.2.0 and deseq2 (love et al., 2014) version 1.6.3. visual inspection […]

READemption institution(s)
Institute for Molecular Infection Biology and Research Centre for Infectious Diseases (ZINF), University of Würzburg, Würzburg, Germany
READemption funding source(s)
Supported by the Bavarian Research Network for Molecular Biosystems (BioSysNet), the BMBF eBio grant RNAsys and DFG project VO 875/4-2, the ZINF Young Investigator program at the Research Center for Infectious Diseases (ZINF, Wurzburg, Germany), DFG project Sh580/1-1, and the Young Academy program of the Bavarian Academy of Sciences.

READemption reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review READemption