READSCAN statistics

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Citations per year

Number of citations per year for the bioinformatics software tool READSCAN
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Tool usage distribution map

This map represents all the scientific publications referring to READSCAN per scientific context
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Associated diseases

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Popular tool citations

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READSCAN specifications

Information


Unique identifier OMICS_00222
Name READSCAN
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained No

Versioning


No version available

Maintainer


This tool is not available anymore.

Publication for READSCAN

READSCAN citations

 (2)
library_books

Overview of Virus Metagenomic Classification Methods and Their Biological Applications

2018
Front Microbiol
PMCID: 5924777
PMID: 29740407
DOI: 10.3389/fmicb.2018.00749

[…] UDes, EnsembleAssembler, FACS, Kraken, LMAT, Metavir, MetLab, SMART, Taxonomer and Virana), or hours (19 workflows: Giant Virus Finder, GOTTCHA, IMSA, MEGAN, MePIC, MetaShot, Metavir 2, NBC, ProViDE, Readscan, Rega Typing Tool, RIEMS, RINS, SLIM, SURPI, Taxy-Pro, “Unknown pathogens from mixed clinical samples,” VIP and ViromeScan), or even days (5 workflows: Exhaustive Iterative Assembly, ViralFus […]

library_books

Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data

2014
BMC Bioinformatics
PMCID: 4131054
PMID: 25091138
DOI: 10.1186/1471-2105-15-262

[…] Clinical PathoScope was evaluated alongside two existing pathogen identification algorithms, RINS [] and READSCAN [] to emphasize the major differences in performance between assembly-based approaches and our implementation of computational subtraction with varying read length and ambiguous read reassign […]


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READSCAN institution(s)
Pathogen Genomics Laboratory, Computational Bioscience Research Center, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia

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