ReadSeq pipeline

ReadSeq specifications

Information


Unique identifier OMICS_17576
Name ReadSeq
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline LoopDLoop Team <>

Additional information


http://iubio.bio.indiana.edu/soft/molbio/readseq/version2/Readseq2-help.html

Information


Unique identifier OMICS_17576
Name ReadSeq
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Version 2.1.3
Stability Stable
Source code URL http://iubio.bio.indiana.edu/soft/molbio/readseq/
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainer


  • person_outline LoopDLoop Team <>

Additional information


http://iubio.bio.indiana.edu/soft/molbio/readseq/version2/Readseq2-help.html

Publication for ReadSeq

ReadSeq IN pipelines

 (3)
2015
PMCID: 4347569
PMID: 25737742
DOI: 10.1186/s13039-015-0112-0

[…] human genome browser (http://genome.ucsc.edu/), repeat masker web server (http://www.repeatmasker.org/cgi-bin/webrepeatmasker), clustalw2 (http://www.ebi.ac.uk/tools/clustalw2/index.html) and www readseq sequence conversion (http://www-bimas.cit.nih.gov/molbio/readseq).table 3 primer sequence (5′ → 3′) […]

2015
PMCID: 4493790
PMID: 26093024
DOI: 10.1093/jxb/erv283

[…] grass genomic regions were selected based on the highest score and >70% query bac coverage. the gene and repeatmasker te annotation gffs were retrieved and reformatted as genbank files using readseq v.2.1.30. manual corrections were made to genbank file tags and field names so that they were readable by mauve. the chromosome region were submitted to the mauve 2.3.1 (darling et al., 2010) […]

ReadSeq institution(s)
Bioinformatics group, Biology Department & Centre Genomics & Bioinformatics, Indiana University, Bloomington, IN, USA

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