ReadXplorer pipeline

ReadXplorer specifications

Information


Unique identifier OMICS_04011
Name ReadXplorer
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline Rolf Hilker <>

Publication for ReadXplorer

ReadXplorer citation

2017
PMCID: 5423683

[…] –ln679996] using tophat2 [16]. two mismatches were allowed to account for possible sequencing errors and allelic variants of the diploid r. solani ag1-ib genome [10]. the rna-seq analysis platform readxplorer [17] was used for the visualization of short read alignments., results of the short read mapping were imported into the platform readxplorer 2.0.1. [17,18]. the r package deseq [19] […]

ReadXplorer institution(s)
Bioinformatics and Systems Biology, Faculty of Biology and Chemistry, Justus-Liebig-University, Giessen, Germany

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