RECAP specifications

Information


Unique identifier OMICS_27935
Name RECAP
Alternative names RECAlibrating P-values, REsampling the read data and CAlling Peaks again
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Theodore Perkins

Publication for RECAlibrating P-values

RECAP citation

library_books

ConReg R: Extrapolative recalibration of the empirical distribution of p values to improve false discovery rate estimates

2011
Biol Direct
PMCID: 3130718
PMID: 21595983
DOI: 10.1186/1745-6150-6-27

[…] achieve good extrapolation. The k that gives stable estimate and the last minimum of is chosen to be the kbest. The regression function, extrapolation and corresponding to k = kbest are chosen for recalibrating p-values and re-estimating FDR.The following is the computational procedure for a given in descending order:1. For each (v is the interval over k and default setting is v = [n/100]), l […]

RECAP institution(s)
Translational and Molecular Medicine Program, University of Ottawa, Ottawa, ON, Canada; Regenerative Medicine Program, Ottawa Hospital Research Institute, Ottawa, ON, Canada; School of Electrical Engineering and Computer Science, University of Ottawa, Ottawa, ON, Canada; Department of Biochemistry, Microbiology and Immunology, University of Ottawa, Ottawa, ON, Canada
RECAP funding source(s)
Supported by Discovery Grant number 328154-2014 from the Natural Sciences and Engineering Research Council of Canada (NSERC).

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