RECOAL statistics

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Associated diseases

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RECOAL specifications


Unique identifier OMICS_07255
Alternative name REference haplotype simulation using a COALescent approach
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No


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Publication for REference haplotype simulation using a COALescent approach

RECOAL in publications

PMCID: 3890628
PMID: 24387001
DOI: 10.1186/1471-2105-15-3

[…] along chromosomes in fine-mapping locations of disease loci. over the past decade, a plethora of coalescent simulators have been developed, e.g. selsim [], coasim [], fastcoal [], mlcoalsim [], and recoal [], to name a few. of them, five most representative and widely used coalescent simulators, hudson’s ms [], mshot [], markovian coalescent simulator (macs) [], simcoal2 [], and fastsimcoal […]

PMCID: 1847806
PMID: 17391520
DOI: 10.1186/1743-422X-4-33

[…] due to their particular combination of model complexity and rate variation, we simulated 100 dna samples of 15 sequences each and longitude 500 bp using a coalescent model []. we used the software recoal1.7 from david posada and available upon request from him []. specifically, we set the simulations with the parameter values corresponding to the evolutionary model, base composition and rate […]

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RECOAL institution(s)
Department of Preventive Medicine, University of Southern California, Los Angeles, CA, USA
RECOAL funding source(s)
Supported by National Institutes of Health (MH084678) and National Science Foundation (HG005927).

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