Recodon protocols

Recodon computational protocol

Recodon specifications


Unique identifier OMICS_06853
Name Recodon
Alternative name NetRecodon
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Parallelization MPI
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Miguel Arenas <>
  • person_outline David Posada <>

Additional information

Publications for Recodon

Recodon IN pipeline

PMCID: 2579306
PMID: 18840286
DOI: 10.1186/1471-2105-9-421

[…] a total of 11 recombination breakpoints, and hence, the strains consist of 12 gene fragments with differing evolutionary histories. the evolutionary trees for the fragments were obtained from recodon output. we used drawgram program included in phylip software package [30] to draw the trees. an example of such a tree is shown in figure 1 for the second gene fragment. remaining trees […]

Recodon institution(s)
Departamento de Bioquímica, Genética e Inmunología, Universidad de Vigo, Vigo, Spain
Recodon funding source(s)
Partially supported by grant BFU2004-02700 (MCyT) and by the FPI fellowship BES-2005-9151 (MEC) from the Spanish government.

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