Main logo
?
tutorial arrow
×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

Recognition Code-Assisted Discovery of regulatory Elements RCADE

A software tool for motif discovery from Cys2His2 zinc finger (C2H2-ZF) ChIP-seq data. RCADE combines predictions from a DNA recognition code of C2H2-ZFs with ChIP-seq data to identify models that represent the genuine DNA binding preferences of C2H2-ZF proteins. RCADE is able to identify generalizable binding models even from peaks that are exclusively located within the repeat regions of the genome, where state-of-the-art motif finding approaches largely fail.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

0 user reviews

No review has been posted.

RCADE forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

RCADE classification

RCADE specifications

Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux
Stability:
Stable
Interface:
Command line interface
Input data:
C2H2 FASTA format and ChIP FASTA format
Computer skills:
Advanced
Maintained:
Yes

RCADE distribution

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

0 user reviews

No review has been posted.

RCADE forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

RCADE classification

RCADE specifications

Interface:
Web user interface
Input data:
C2H2 FASTA format and ChIP FASTA format
Stability:
Stable
Restrictions to use:
None
Computer skills:
Basic
Maintained:
Yes

RCADE support

Maintainer

  • Timothy Hughes <>
  • Timothy Hughes <>

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Canada

Link to literature

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.