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RECON specifications

Information


Unique identifier OMICS_03597
Name RECON
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for RECON

RECON in publications

 (4)
PMCID: 5943519
PMID: 29743638
DOI: 10.1038/s41598-018-24481-1

[…] intergenic sequences without noncoding rna potential from the three candidate regions, respectively, and calculated the nucleosome formation potential for candidate intergenic regions using the recon web service (http://wwwmgs.bionet.nsc.ru/mgs/programs/recon/) with default settings. 1 kb regions with the lowest nucleosome formation potential were preferred and indicated by black circles […]

PMCID: 3333777
PMID: 22023798
DOI: 10.1186/gb-2011-12-10-r107

[…] using repeatmasker [,] with the repbase database [,] (version: 2009-06). a de novo repeat library was also constructed by using repeatmodeler, which contains two de novo repeat finding programs (recon [] and repeatscout []). we used default parameters and generated consensus sequences and classification information for each repeat family. then, we ran repeatmasker on the genome again using […]

PMCID: 2630984
PMID: 19077230
DOI: 10.1186/1471-244X-8-94

[…] of confidence to the promoter prediction. the programs report cpg rich regions using emboss newcpgseek (threshold cpg score of 17) & cpgplot, and cpgprod [,,], nucleosomal binding sites using recon [], transcription start sites using eponine [], human transfac transcription factor site clusters using cister [], and emboss matrix/scaffold attachment regions using marscan []., secondary […]

PMCID: 2491644
PMID: 18613977
DOI: 10.1186/1471-2164-9-326

[…] that the ataa motif could also participate in nucleosome formation in dipteran immune response genes. some algorithms have been developed to predict the chromatin structure from sequence [,,]. the recon algorithm uses experimentally determined nucleosomal sequences coupled to monte carlo methods and discriminant analysis of dinucleotide frequencies []. it searches for a partition […]


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RECON institution(s)
Novosibirsk State University, Pirogova 2, Novosibirsk, Russia

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