Reconciliation methods aim at recovering the evolutionary processes that shaped the history of a given gene family including events such as duplications, transfers and losses by comparing the discrepancies between the topologies of the associated gene and species trees. These…
Desktop app
PentaPlot PentaPlot

PentaPlot

Computes such dekapentagonal maps given an appropriate probability support…

Computes such dekapentagonal maps given an appropriate probability support matrix. PentaPlot utilizes a genetic algorithm with demes and a local search strategy to search for the optimal layout. The…

Web app
Desktop app
ecceTERA ecceTERA

ecceTERA

A program that implements a generic parsimony reconciliation algorithm, which…

A program that implements a generic parsimony reconciliation algorithm, which accounts for gene duplication, loss, and transfer (DTL) as well as speciation, involving sampled and unsampled lineages,…

Desktop app
Web app
primetv primetv

primetv

A reconciliation viewer. primetv is a simple and compact visualization program…

A reconciliation viewer. primetv is a simple and compact visualization program that is the first automatic tool for illustrating general tree reconciliations. It reads reconciled trees in an extended…

Desktop app
SylvX SylvX

SylvX

A reconciliation viewer which implements classical phylogenetic graphic…

A reconciliation viewer which implements classical phylogenetic graphic operators (swapping, highlighting, etc.) and new methods to ease interpretation and comparison of reconciliations (multiple…

Desktop app
CoRe-PA CoRe-PA

CoRe-PA

A software tool for parameter-adaptive cophylogenetic analysis. Different from…

A software tool for parameter-adaptive cophylogenetic analysis. Different from other event-based reconstruction methods CoRe-PA does not require any cost settings for the considered cophylogenetic…

Desktop app
Jane Jane

Jane

A software tool for the cophylogeny reconstruction problem. The input to Jane…

A software tool for the cophylogeny reconstruction problem. The input to Jane is a file containing a "host" tree, a "parasite" tree, and a mapping of the tips of the parasite tree…

Web app
DTL-RnB DTL-RnB

DTL-RnB

A tool for browsing the potentially large landscape of maximum parsimony…

A tool for browsing the potentially large landscape of maximum parsimony reconciliations (MPRs) of pairs of phylogenetic trees (e.g., species and gene trees or host and parasite trees). DTL-RnB…

Advertisements
Join Omic Community

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.