RECOORD statistics

Tool stats & trends

Looking to identify usage trends or leading experts?

Protocols

RECOORD specifications

Information


Unique identifier OMICS_06365
Name RECOORD
Restrictions to use None
Maintained Yes

Publication for RECOORD

RECOORD citations

 (27)
call_split

Lengths of the C Terminus and Interconnecting Loops Impact Stability of Spider Derived Gating Modifier Toxins

2017
Toxins
PMCID: 5577582
PMID: 28805686
DOI: 10.3390/toxins9080248
call_split See protocol

[…] ny) [] to refine peak assignments. Dihedral angle restraints were generated using TALOS-N (Bax Group, NIH, Pike Bethseda, MD, USA) []. After initial structure determination on CYANA, protocols on the RECOORD database [], were used to generate 50 structures which were then refined in a water shell [], and a final set of 20 structures was chosen based on the lowest energy, best MolProbity scores [], […]

library_books

Accurate de novo design of hyperstable constrained peptides

2016
Nature
PMCID: 5161715
PMID: 27626386
DOI: 10.1038/nature19791

[…] using the program TALOS-N. The final set of structures was generated within CNS using torsion angle dynamics, refinement and energy minimization in explicit solvent and protocols as developed for the RECOORD database. Final structures were assessed for stereochemical quality using MolProbity. […]

library_books

VirB8 like protein TraH is crucial for DNA transfer in Enterococcus faecalis

2016
Sci Rep
PMCID: 4840375
PMID: 27103580
DOI: 10.1038/srep24643

[…] CYANA 3.0 was used for automated NOE cross-peak assignment. Distance restraints from the CYANA calculation- and TALOS+ derived torsion angles were used in a water refinement calculation using the RECOORD protocol. The quality of the structure ensemble was validated using the iCING web server. Molecular images were generated using PyMOL (Delano Scientific, Palo Alto, CA) and the UCSF Chimera pa […]

library_books

Solution structure of the Z DNA binding domain of PKR like protein kinase from Carassius auratus and quantitative analyses of the intermediate complex during B–Z transition

2016
Nucleic Acids Res
PMCID: 4824103
PMID: 26792893
DOI: 10.1093/nar/gkw025

[…] f NOE cross-peaks and structure calculation. On the basis of distance restraints derived from CYANA output, further structure calculations were carried out using CNS 1.3 in explicit solvent using the RECOORD protocol (–). The 10 lowest-energy structures were validated by PROCHECK-NMR (). Structures were visualized using the program Discovery Studio 4.1 (BIOVIA, San Diego, CA, USA). Structural stat […]

library_books

Structure Analysis Uncovers a Highly Diverse but Structurally Conserved Effector Family in Phytopathogenic Fungi

2015
PLoS Pathog
PMCID: 4624222
PMID: 26506000
DOI: 10.1371/journal.ppat.1005228

[…] and 72 Φ/Ψ dihedral angle constraints, respectively. The 30 conformers with lowest target function starting from 200 initial structures, were refined by CNS (v. 1.2) using the refinement in water of RECOORD []. The final 20 conformers were selected with the lowest NOE and dihedral angle violations. These are the structures discussed herein and deposited (PDBs, 2MYV and 2MYW). The final 20 structu […]

call_split

Synergistic Activity of the Plant Defensin HsAFP1 and Caspofungin against Candida albicans Biofilms and Planktonic Cultures

2015
PLoS One
PMCID: 4527839
PMID: 26248029
DOI: 10.1371/journal.pone.0132701
call_split See protocol

[…] ints generated using the program TALOS+ []. The structural family was generated using torsion angle dynamics, refinement and energy minimization in explicit solvent and protocols as developed for the RECOORD database [] within the program CNS []. A family of structures consistent with the experimental restraints was then visualized using MOLMOL [] and assessed for stereochemical quality using MolP […]

Citations

Looking to check out a full list of citations?

RECOORD institution(s)
Bijvoet Center for Biomolecular Research, Utrecht University, Utrecht, Netherlands

RECOORD reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review RECOORD