RECOT specifications


Unique identifier OMICS_24228
Alternative name REad COordinate Transformer
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data The short reads whose mapping coordinates users want to transform, the genome sequence of the query species, the gene regions of the query genome in the GFF3 format, and the genome sequence of the target species.
Input format GFF3
Output format SAM
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Stability Stable
Requirements BWA, Bowtie, GMAP, GSNAP
Maintained Yes



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  • person_outline Jun Sese <>
  • person_outline Akiko Izawa <>

Publication for REad COordinate Transformer

RECOT institution(s)
Department of Computer Science, Ochanomizu University, Tokyo, Japan; Department of Computer Science, Tokyo Institute of Technology, Tokyo, Japan
RECOT funding source(s)
Supported by Grant-in-Aid for Scientific Research on Innovative Areas (23126504) from the Ministry of Education, Culture, Sports, Science and Technology, Japan.

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