RecountDB

Provides a secondary database derived from primary data in NCBI's short read archive. RecountDB holds sequence counts from RNA-seq and 5′ capped transcription start site experiments, corrected and mapped to the relevant genome. Via a searchable and browseable interface users can obtain corrected data in formats useful for transcriptomic analysis. The database is currently populated with 2265 entries from 45 organisms. RecountDB is publicly available online.

RecountDB specifications

Dataset

Information

Unique identifier	OMICS_16422
Name	RecountDB
Restrictions to use	None
Community driven	No
Data access	Browse
User data submission	Not allowed
Maintained	No

Maintainer

This tool is not available anymore.

Publication for RecountDB

RecountDB: a database of mapped and count corrected transcribed sequences

2012 Nucleic Acids Res

PMCID: 3245132

PMID: 22139942

DOI: 10.1093/nar/gkr1172

RecountDB institution(s)

Graduate School of Frontier Sciences, University of Tokyo, Kashiwanoha, Kashiwa, Japan; Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology (AIST), Aomi, Koto-ku, Tokyo, Japan

RecountDB funding source(s)

This work is supported by a Japanese Ministry of Education, Sport, Science and Technology (MEXT), Grant-in-Aid for Scientific Research on Innovative Areas (221S002).

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