recountNNLS specifications


Unique identifier OMICS_26412
Name recountNNLS
Alternative name recount Non-Negative Least Squares
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Some raw reads/alignments.
Operating system Unix/Linux, Mac OS
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 0.99.2
Stability Stable
Requirements recountNNLSdata, GenomicRanges, SummarizedExperiment
Maintained Yes



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  • person_outline Jeffrey Leek <>
  • person_outline Margaret Taub <>
  • person_outline Jack Fu <>

Publication for recount Non-Negative Least Squares

recountNNLS institution(s)
Department of Biostatistics, Johns Hopkins University, Baltimore MD, USA; Center for Computational Biology, Johns Hopkins University, Baltimore, MD, USA; Division of Biostatistics and Bioinformatics, Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD, USA; Department of Biomedical Engineering, Oregon Health and Science University, Portland, OR, USA; Department of Surgery, Oregon Health and Science University, Portland, OR, USA; Lieber Institute for Brain Development, Baltimore, MD, USA

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