redGEM specifications


Unique identifier OMICS_19734
Name redGEM
Alternative name red GEnome-scale Metabolic networks
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data (i) a GEM, (ii) metabolic subsystems that are of interest for a physiology under study; (iii) information about utilized substrates and medium components; and (iv) available physiological data.
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Vassily Hatzimanikatis <>

Publication for red GEnome-scale Metabolic networks

redGEM institution(s)
Laboratory of Computational Systems Biotechnology, Ecole Polytechnique Federale de Lausanne (EPFL), CH, Lausanne, Switzerland
redGEM funding source(s)
Supported by Ecole Polytechnique Federale de Lausanne (EPFL), the Swiss National Science Foundation, the European Union’s Horizon 2020 research and innovation programme under grant agreement No 686070, MicroscapesX within, the Swiss Initiative for Systems Biology evaluated by the Swiss National Science Foundation, and RobustYeast within ERA net project via

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