- Unique identifier:
- Command line interface
- Input data:
- A whole genome sequencing data based on long single-molecule (male-only or mixed sex samples and reads must be self-error corrected) and short reads from both male and female samples independently and a file with the mitochondrial reference genome.
- Output data:
- A file with kmer results, candidates and data for plotting
- Operating system:
- GNU General Public License version 3.0
- Software type:
- Restrictions to use:
- Input format:
- Output format:
- Programming languages:
- Assembly language, R, Shell (Bash)
- Computer skills:
No open topic.
(Papathanos and Windbichler, 2017)
Redkmer: An assembly-free pipeline for the identification of abundant and specific X-chromosome target sequences for X-shredding by CRISPR endonucleases.
Department of Experimental Medicine, University of Perugia, Perugia, Italy; Department of Life Sciences, Imperial College London, London, UK
Supported by a Rita Levi Montalcini award from the Ministry Education, University and Research (MIUR – D.M. no. 79 04.02.2014), the BBSRC under the research grant BB/P000843/1, in part by a grant from the Foundation for the National Institutes of Health through the Vector-Based Control of Transmission: Discovery Research (VCTR) program of the Grand Challenges in Global Health initiative of the Bill & Melinda Gates Foundation and by the European Research Council under the European Union’s Seventh Framework Programme ERC grant no. 335724.
0 user reviews
0 user reviews
No review has been posted.