Redkmer specifications


Unique identifier OMICS_22925
Name Redkmer
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A whole genome sequencing data based on long single-molecule (male-only or mixed sex samples and reads must be self-error corrected) and short reads from both male and female samples independently and a file with the mitochondrial reference genome.
Input format FASTA+FASTQ
Output data A file with kmer results, candidates and data for plotting
Output format TXT+FASTA
Operating system Unix/Linux
Programming languages Assembly language, R, Shell (Bash)
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes




No version available

Additional information

Publication for Redkmer

Redkmer institution(s)
Department of Experimental Medicine, University of Perugia, Perugia, Italy; Department of Life Sciences, Imperial College London, London, UK
Redkmer funding source(s)
Supported by a Rita Levi Montalcini award from the Ministry Education, University and Research (MIUR – D.M. no. 79 04.02.2014), the BBSRC under the research grant BB/P000843/1, in part by a grant from the Foundation for the National Institutes of Health through the Vector-Based Control of Transmission: Discovery Research (VCTR) program of the Grand Challenges in Global Health initiative of the Bill & Melinda Gates Foundation and by the European Research Council under the European Union’s Seventh Framework Programme ERC grant no. 335724.

Redkmer reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Redkmer