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RedoxDB specifications

Information


Unique identifier OMICS_04186
Name RedoxDB
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Publication for RedoxDB

RedoxDB citations

 (4)
library_books

Features of reactive cysteines discovered through computation: from kinase inhibition to enrichment around protein degrons

2017
Sci Rep
PMCID: 5703995
PMID: 29180682
DOI: 10.1038/s41598-017-15997-z

[…] cysteine were returned, 540 of S-nitrosocysteine, and 66 of S-glutathionyl cysteine. Since the number of S-glutathionylation instances is relatively small, further data were sought and added from the redoxDB database (243 instances), and from proteomic studies (890 instances, and 353 instances), for a total of 1552. Filtering UniProt S-nitrosocysteine modifications for human leaves just 60 protein […]

library_books

Prediction of reversible disulfide based on features from local structural signatures

2017
BMC Genomics
PMCID: 5379614
PMID: 28376774
DOI: 10.1186/s12864-017-3668-8

[…] e with similar flanking sequences (10 residues at both sides), the RevSS_PDB dataset consists of 230 reversible disulfides and 450 structural disulfides (Additional file : Table S1).To generate RevSS_RedoxDB dataset, we first retrieved 235 known reversible disulfides from the RedoxDB [] which is a manually curated database for various types of experimentally validated redox-sensitve cysteines. We […]

library_books

SOHSite: incorporating evolutionary information and physicochemical properties to identify protein S sulfenylation sites

2016
BMC Genomics
PMCID: 4895302
PMID: 26819243
DOI: 10.1186/s12864-015-2299-1

[…] ranscription factor H1F1A by SIRT6 []. As shown in Table , the data were composed of 1443 positive and 10521 negative data on 987 S-sulfenylated proteins. An additional set of data was collected from RedoxDB [], UniProtKB [] and other published literature. From the RedoxDB database, we obtained 102 S-sulfenylated sites (positive dataset) in 92 proteins, while the rest of the cysteine residues in t […]

library_books

Quantitative H2S mediated protein sulfhydration reveals metabolic reprogramming during the integrated stress response

2015
eLife
PMCID: 4733038
PMID: 26595448
DOI: 10.7554/eLife.10067.039

[…] niprot entry was searched and any annotation corresponding to the labeled cysteine peptides was collected.For redox cysteine annotation: each peptide identified by MS, all exact matches in any of the RedoxDB databases on any oxidative modification cysteine sequences (fasta or additional_fasta) were collected. For motif search: The lager data set of putative modification cysteine sites and their vi […]

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RedoxDB institution(s)
School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, China
RedoxDB funding source(s)
The work is funded by grant HKBU1/CRF/10 and partially by a grant from the Institute of Plant Molecular Biology and Agricultural Biotechnology at CUHK.

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