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Reference-assisted assembly software tools | De novo genome sequencing data analysis

An alternative approach for scaffolding genomes relies on the use of a complete (closed) reference genome to guide the ordering and the orientating of the contigs. Many available methods exist for mapping (and then scaffolding) the generated draft contigs.

Source text:
(Bosi et al., 2015) MeDuSa: a multi-draft based scaffolder. Bioinformatics.

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