RAMBL specifications

Unique identifier:
OMICS_17016
Software type:
Pipeline/Workflow
Restrictions to use:
None
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
GCC, Bowtie2, Samtools, Bedtools, Sickle, Seqtk
Name:
reference-based ribosome assembly
Interface:
Command line interface
Input data:
A reference gene sequence and the aligned read.
Programming languages:
Python
Stability:
Stable
Maintained:
Yes

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RAMBL distribution

download

RAMBL support

Documentation

Maintainer

  • Feng Zeng <>

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Publications

Institution(s)

Department of Automation, Xiamen University, Xiamen, Fujian, China; Bioinformatics Division, TNLIST and Department of Automation, Tsinghua University, Beijing, China; Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, USA; State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China; Earth Science Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA; Bioinformatics Division, TNLIST, and Department of Computer Science and Technology, Tsinghua University, Beijing, China; Program in Computational Biology and Bioinformatics, University of Southern California, Los Angeles, CA, USA

Funding source(s)

Supported by the National Natural Science Foundation of China (Nos: 61503314, 61561146396 and 61203282) and the Tsinghua TNLIST Big Data Grant.

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