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RefineTree specifications
Information
| Unique identifier | OMICS_13164 |
|---|---|
| Name | RefineTree |
| Interface | Web user interface |
| Restrictions to use | None |
| Output format | Dynamic or PNG |
| Computer skills | Basic |
| Stability | Stable |
| Maintained | Yes |
Maintainer
- person_outline Eric Tannier <>
Publication for RefineTree
2016 PLoS One
PMCID: 4981423
PMID: 27513924
DOI: 10.1371%2Fjournal.pone.0159559
RefineTree in publication
library_books
Automated hierarchical classification of protein domain subfamilies based on functionally divergent residue signatures
PMCID: 3599474
PMID: 22726767
DOI: 10.1186/1471-2105-13-144
[…] sets, patterns, and seed alignments, wdigrph := rtndigraph(sqsets);//returns a weighted directed graph of set relationships, tree := shortestpathtree(wdigrph);//as defined by tarjan[], tree := refinetree(tree);//eliminates insignificant nodes and overlap between sets., fd-table := treetofdtable(tree);, sma := createseedalignments(tree); // characteristic, cross-phyla seqs for each set., […]
RefineTree institution(s)
Département d’Informatique (DIRO), Université de Montréal, Montréal, QC, Canada; LBBE, UMR CNRS 5558, Université de Lyon 1, Villeurbanne, France; INRIA Grenoble Rhône-Alpes, Montbonnot, France; University of Lausanne, Switzerland
RefineTree funding source(s)
This work was funded by the Agence Nationale de la Recherche, the Natural Sciences and Engineering Research Council of Canada, and the Canadian Network for Research and Innovation in Machining Technology.
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