Reformat specifications

Information


Unique identifier OMICS_17797
Name Reformat
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTA, FASTQ
Output format FASTA, FASTQ
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes

Download


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Versioning


No version available

Maintainer


  • person_outline Brian Bushnell

Additional information


http://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/reformat-guide/

Reformat citation

library_books

High resolution phylogenetic microbial community profiling

2016
PMCID: 5029162
PMID: 26859772
DOI: 10.1038/ismej.2015.249

[…] s, unique.seqs, pre.cluster, dist.seqs, cluster, align.seqs, filter.seqs, dist.seqs) () (). Chimeras were additionally removed by filtering reads ⩽1340 and⩾1640 bp based on read length analysis using reformat.sh in BBMap (http://sourceforge.net/projects/bbmap/) (). Each step in the workflow was first optimized using a synthetic data set generated using randomreads.sh in BBMap (http://sourceforge.n […]

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