Reformat statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Reformat
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Tool usage distribution map

This map represents all the scientific publications referring to Reformat per scientific context
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Associated diseases

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Popular tool citations

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Reformat specifications

Information


Unique identifier OMICS_17797
Name Reformat
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTA, FASTQ
Output format FASTA, FASTQ
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline Brian Bushnell

Additional information


http://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/reformat-guide/

Reformat citation

library_books

High resolution phylogenetic microbial community profiling

2016
PMCID: 5029162
PMID: 26859772
DOI: 10.1038/ismej.2015.249

[…] V4 primer sequences (515 F, 806 R) to PhyloTag sequences (msa.sh) and selecting intervening sequences (cutprimers.sh). V4 sequences were screened for a length of 232±60 bp (3 s.e.m. V4 iTag length) (reformat.sh), resulting in 195 036 sequences present in both FL and V4 sequence pools (filterbyname.sh). V4 sequences were mapped against PhyloTags using bbmap.sh (flag ‘ambiguous=all'). Ambiguous mat […]


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