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Reformat specifications


Unique identifier OMICS_17797
Name Reformat
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTA, FASTQ
Output format FASTA, FASTQ
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes




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  • person_outline Brian Bushnell

Additional information

Reformat citation


High resolution phylogenetic microbial community profiling

PMCID: 5029162
PMID: 26859772
DOI: 10.1038/ismej.2015.249

[…] V4 primer sequences (515 F, 806 R) to PhyloTag sequences ( and selecting intervening sequences ( V4 sequences were screened for a length of 232±60 bp (3 s.e.m. V4 iTag length) (, resulting in 195 036 sequences present in both FL and V4 sequence pools ( V4 sequences were mapped against PhyloTags using (flag ‘ambiguous=all'). Ambiguous mat […]

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