RefProtDom specifications

Information


Unique identifier OMICS_21335
Name RefProtDom
Alternative name a protein database with improved domain boundaries and homology relationships
Restrictions to use None
Community driven Yes
Data access File download, Browse
User data submission Not allowed
Version 1.0
Maintained Yes

Maintainers


  • person_outline William Pearson
  • person_outline Mileidy Gonzalez

Publication for a protein database with improved domain boundaries and homology relationships

RefProtDom citation

library_books

Partial protein domains: evolutionary insights and bioinformatics challenges

2015
Genome Biol
PMCID: 4436111
PMID: 25986583
DOI: 10.1186/s13059-015-0663-8

[…] Two recent Genome Biology articles investigated partial matches to Pfam domains. Triant and Pearson [] show that almost 4% of Pfam domains from a representative subset (RefProtDom2 (RPD2) with 136 families) are shorter than 50% of the length of the HMM of that family. Detailed examination identifies several reasons for these partial matches. The largest fraction of 5 […]

RefProtDom institution(s)
Department of Biological Sciences, University of Maryland Baltimore County, Baltimore, MD, USA; Department of Biochemistry and Molecular Genetics, Charlottesville, VA, USA
RefProtDom funding source(s)
Supported by the National Library of Medicine, grant LM04969.

RefProtDom reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review RefProtDom