REGA HPV Subtyping Tool specifications

Information


Unique identifier OMICS_24632
Name REGA HPV Subtyping Tool
Alternative names REGA Human papillomavirus Subtyping Tool, REGA HPV (Human Papillomavirus) Automated Subtyping Tool
Interface Web user interface
Restrictions to use None
Input data Some sequence(s).
Input format FASTA
Output data The batch report that contains information on the sequence name, length, assigned subtype and a figure of the HPV genome and the sequence report composed of three areas named: sequence assignment, analysis details and phylogenetic analyses.
Output format (CSV,XML)+(PDF,Nexus)
Programming languages Java, PHP
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Viruses
    • Human papillomavirus

Maintainers


  • person_outline Tulio De Oliveira <>
  • person_outline Tulio De Oliveira <>
  • person_outline Tulio de Oliveira <>
  • person_outline Marc Van Ranst <>

Additional information


http://bioafrica.mrc.ac.za/rega-genotype/html/

Publications for REGA HPV Subtyping Tool

REGA HPV Subtyping Tool institution(s)
Laboratorio Avancado de Saude Publica, Centro de Pesquisas Goncalo Moniz, Fundacao Oswaldo Cruz, Brazil; MRC Unit for Inflammation and Immunity, Department of Immunology, University of Pretoria and Tshwane Academic Division of the National Health Laboratory Service, Pretoria, South Africa; Laboratory for Clinical and Epidemiological Virology, Katholieke Universiteit Leuven, Rotselaar, Belgium; Department of Zoology, University of Oxford, UK; Africa Centre for Health and Population Studies, University of KwaZulu-Natal, South Africa
REGA HPV Subtyping Tool funding source(s)
Supported by Katholieke Universiteit Leuven (grant OT/04/43); Belgian Fonds voor Wetenschappelijk Onderzoek (F.W.O. nr G.0266.04); Virolab project (EU IST STREP Project 027446); the Wellcome Trust (082384/ Z/07/Z) and European Union (SANTE 2007 147-790); the Africa Centre for Health and Population Studies; the European Union (SANTE 2007 147-790) and NRF, South Africa. The Royal Society.

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