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Region-based association analysis software tools | Genome-wide association study

Region-based association analysis is a more powerful tool for gene mapping than testing of individual genetic variants, particularly for rare genetic variants. Source text: Svishcheva et al., 2015.

DBlocks
Desktop

DBlocks

Detects haplotype blocks that simultaneously use information about…

Detects haplotype blocks that simultaneously use information about linkage-disequilibrium (LD) decay between blocks and the diversity of haplotypes within blocks. By use of phased single-nucleotide…

FREGAT
Desktop

FREGAT Family REGional Association Tests

An R package that can handle family and population samples and implements a…

An R package that can handle family and population samples and implements a wide range of region-based association methods including burden tests, functional linear models, and kernel machine-based…

FFBSKAT
Desktop

FFBSKAT Fast Family-Based Sequence Kernel Association Test

An efficient tool for region/gene association analysis of quantitative traits…

An efficient tool for region/gene association analysis of quantitative traits in samples of related individuals. This software implements a score-based variance component test to assess the…

famFLM
Desktop

famFLM

A region-based association test for familial data under functional linear…

A region-based association test for familial data under functional linear models. famFLM increases the power of regional association analysis of quantitative traits compared with burden-based and…

famSKAT
Desktop

famSKAT family-based SKAT

An extension of sequence kernel association test (SKAT) that can be applied to…

An extension of sequence kernel association test (SKAT) that can be applied to data with familial correlation. famSKAT has a different test statistic and null distribution compared to SKAT, but is…

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