regioneR specifications

Unique identifier:
OMICS_10179
Interface:
Command line interface
Input data:
Different BED-like R objects and file formats can be used as input to any function in regioneR.
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
License:
Artistic License version 2.0
Version:
1.0.3
Requirements:
memoise, GenomicRanges, BSgenome, rtracklayer, parallel

versioning

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regioneR support

Documentation

Maintainer

  • Bernat Gel <>

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Credits

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Publications

Institution(s)

Institute of Predictive and Personalized Medicine of Cancer (IMPPC), Campus Can Ruti, Badalona, Spain; Josep Carreras Institute for Leukaemia Research (IJC), Campus ICO-HGTP, Campus Can Ruti, Badalona, Spain

Funding source(s)

This work has been supported by the Spanish Ministry of Economy and Competitiveness (SAF2012/39749; SAF2011/23638; RYC2010/07337; PTC2011/1091) and the Carlos III Health Institute (ISCIII-RTICC RD12/0036/008; PI11/1609; PI14/00577) all within the “Plan Nacional de I+D+I 2008-2011” and “Plan Estatal de I+D+I 2013-2016” and co-financed with FEDER funds; the Goverment of Catalonia (2009 SGR 290; 2014 SGR 338) and the Asociación Española Contra el Cáncer (AECC).

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